Stem-loop sequence bta-mir-455

Accession

MI0005049 (change log)

Description

Bos taurus miR-455 stem-loop

Gene family

MIPF0000129; mir-455

Literature search

7 open access papers mention bta-mir-455
(22 sentences)

Stem-loop

   ucccu   -g     -----          u      a   c   gaa 
5'      ggc  ugagg     guaugugccu uggacu cau gug   g
        |||  |||||     |||||||||| |||||| ||| |||    
3'      ccg  acucc     cauauacggg accuga gua cac   c
   ---au   ga     guuca          u      c   c   gac 

Deep sequencing

6753 reads, 0 reads per million, 66 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr8: 105738159-105738247 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000042281 ; bta-mir-455-201; exon 1

  ENSBTAT00000001200 ; COL27A1-201; intron 10

Database links

• EntrezGene:MIR455
• RNAcentral:URS000075E535_9913
• miRBase Tracker:MI0005049

Mature sequence bta-miR-455-5p

• Accession: MIMAT0003835
• Previous IDs: bta-miR-455
• Sequence: 16 - uaugugccuuuggacuacauc - 36
• Deep sequencing: 4351 reads, 66 experiments
• Evidence: by similarity; MI0003516
• Predicted targets:
  • TargetScanVert:bta-miR-455-5p

Mature sequence bta-miR-455-3p

• Accession: MIMAT0003836
• Previous IDs: bta-miR-455*
• Sequence: 54 - gcaguccaugggcauauacacu - 75
• Deep sequencing: 2399 reads, 66 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-455-3p

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).