Stem-loop bta-mir-200c

Accession

MI0005038

Description

Bos taurus bta-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

22 open access papers mention bta-mir-200c
(68 sentences)

Sequence

25015 reads, 381 reads per million, 74 experiments

cgucuuacccagcaguguuugggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAgg
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))....

Structure

----    -      a        u   u   gg 
    cguc uuaccc gcaguguu ggg gcu  u
    |||| |||||| |||||||| ||| |||  u
    GUAG AAUGGG CGUCAUAA cuc uga  g
ggAG    U      C        U   -   gg 

Annotation confidence High

Genome context

chr5: 104150173-104150237 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-200c

Mature bta-miR-200c

• Accession: MIMAT0003823
• Description: Bos taurus bta-miR-200c mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677