Stem-loop sequence bta-mir-200a

AccessionMI0005037 (change log)
DescriptionBos taurus miR-200a stem-loop
Gene family MIPF0000019; mir-8
Literature search

20 open access papers mention bta-mir-200a
(50 sentences)

Stem-loop 
      - c   g        -             c    uuuc     
5' ggg c ucu uggacauc uuaccggacagug ugga    ucgg 
   ||| | ||| |||||||| ||||||||||||| ||||    ||| c
3' ccc g gga acuuguag aauggucugucac aucu    agcu 
      a u   a        c             a    ---c
Get sequence
Deep sequencing
296734 reads, 6.78e+03 reads per million, 78 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr16: 52694578-52694663 [-]
intergenic
Clustered miRNAs
< 10kb from bta-mir-200a
bta-mir-200bchr16: 52695246-52695304 [-]
bta-mir-200achr16: 52694578-52694663 [-]
bta-mir-429chr16: 52693343-52693426 [-]
Database links

Mature sequence bta-miR-200a

Accession MIMAT0003822
Sequence

52 -  

uaacacugucugguaacgauguu

 - 74

Get sequence
Deep sequencing293603 reads, 78 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).