Stem-loop sequence bta-mir-17

AccessionMI0005031 (change log)
DescriptionBos taurus miR-17 stem-loop
Gene family MIPF0000001; mir-17
Literature search

31 open access papers mention bta-mir-17
(152 sentences)

Stem-loop 
       ga       -ca        a  g     g   -  au 
5' guca  auaaugu   aagugcuu ca ugcag uag ug  a
   ||||  |||||||   |||||||| || ||||| ||| ||  u
3' cagu  uauuacg   uucacgga gu acguc auc ac  g
       gg       aug        a  g     -   u  gu
Get sequence
Deep sequencing
17042 reads, 149 reads per million, 74 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr12: 66421236-66421319 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-17
bta-mir-17chr12: 66421236-66421319 [+]
bta-mir-18achr12: 66421379-66421449 [+]
bta-mir-19achr12: 66421518-66421599 [+]
bta-mir-20achr12: 66421687-66421757 [+]
bta-mir-19bchr12: 66421815-66421901 [+]
bta-mir-92a-1chr12: 66421937-66422014 [+]
Database links

Mature sequence bta-miR-17-5p

Accession MIMAT0003815
Sequence

14 -  

caaagugcuuacagugcagguagu

 - 37

Get sequence
Deep sequencing13481 reads, 71 experiments
Evidence experimental; cloned [1-2]
Predicted targets

Mature sequence bta-miR-17-3p

Accession MIMAT0003816
Sequence

51 -  

acugcagugaaggcacuugu

 - 70

Get sequence
Deep sequencing3561 reads, 74 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2
PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).