Stem-loop sequence bta-mir-132

Accession

MI0005028 (change log)

Description

Bos taurus miR-132 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

15 open access papers mention bta-mir-132
(50 sentences)

Stem-loop

   c   cccc    -  c a    a         uuc          -g     
5'  cgc    gcgu cu c gggc accguggcu   gauuguuacu  uggg 
    |||    |||| || | |||| |||||||||   ||||||||||  ||| a
3'  gcg    cgca ga g cccg ugguaccga   cugacaaugg  gcca 
   c   cacc    c  c c    c         cau          ag     

Deep sequencing

4855 reads, 25.4 reads per million, 67 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 23783488-23783588 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-132

• bta-mir-212: chr19: 23783918-23784028 [-]
• bta-mir-132: chr19: 23783488-23783588 [-]

Database links

• EntrezGene:MIR132
• miRBase Tracker:MI0005028

Mature sequence bta-miR-132

• Accession: MIMAT0003812
• Sequence: 59 - uaacagucuacagccauggucg - 80
• Deep sequencing: 4648 reads, 67 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-132

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).