miRBase entry: bta-mir-545

Stem-loop bta-mir-545


Accession
MI0005023
Description
Bos taurus bta-mir-545 precursor miRNA
Gene family
MIPF0000098; mir-95


Sequence

345 reads, 27 reads per million, 65 experiments
cccagccuggcacauucguaggccUCAGUAAAUGUUUAUUGGAUGaauaaaugaauggcucAUCAACAAACAUUUAUUGUGUGccugcuaacgugaucuccacagg
.....((((((((.((.(((((((.((((((((((((....(((((.............)))))...)))))))))))).).)))))).)).))).....).))))

Structure
cccag    - -----   a  c      - U            AUUG     auaaa 
     ccug g     cac uu guaggc c CAGUAAAUGUUU    GAUGa     u
     |||| |     ||| || |||||| | ||||||||||||    |||||     g
     ggac c     gug aa cguccG G GUUAUUUACAAA    CUAcu     a
-----    a cucua   c  u      U U            -CAA     cggua 


Annotation confidence High
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Genome context
chrX: 82917716-82917821 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-545-5p

Accession MIMAT0003806
Description Bos taurus bta-miR-545-5p mature miRNA
Sequence 25 - UCAGUAAAUGUUUAUUGGAUG - 45
Evidence experimental
cloned [1]

Mature bta-miR-545-3p

Accession MIMAT0003807
Description Bos taurus bta-miR-545-3p mature miRNA
Sequence 62 - AUCAACAAACAUUUAUUGUGUG - 83
Evidence experimental
Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677