Stem-loop sequence bta-mir-369

Accession

MI0005020 (change log)

Description

Bos taurus miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention bta-mir-369
(13 sentences)

Stem-loop

   -   ag               ua      cuuua 
5'  uga  ggagaucgaccgugu  uauucg     u
    |||  |||||||||||||||  ||||||      
3'  acu  uuucuaguugguaca  auaagc     u
   g   cu               ua      uucag 

Deep sequencing

6998 reads, 23.8 reads per million, 63 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr21: 67881914-67881982 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000042173 ; bta-mir-369-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-369

• bta-mir-668: chr21: 67872162-67872257 [+]
• bta-mir-485: chr21: 67872328-67872400 [+]
• bta-mir-453: chr21: 67873059-67873138 [+]
• bta-mir-154a: chr21: 67876412-67876495 [+]
• bta-mir-154b: chr21: 67876730-67876810 [+]
• bta-mir-496: chr21: 67877242-67877342 [+]
• bta-mir-377: chr21: 67878863-67878931 [+]
• bta-mir-541: chr21: 67880717-67880800 [+]
• bta-mir-3957: chr21: 67881103-67881179 [+]
• bta-mir-409a: chr21: 67881619-67881697 [+]
• bta-mir-409b: chr21: 67881619-67881697 [-]
• bta-mir-412: chr21: 67881761-67881850 [+]
• bta-mir-369: chr21: 67881914-67881982 [+]
• bta-mir-410: chr21: 67882238-67882318 [+]
• bta-mir-323b: chr21: 67882753-67882832 [+]
• bta-mir-656: chr21: 67883062-67883140 [+]

Database links

• EntrezGene:MIR369
• miRBase Tracker:MI0005020

Mature sequence bta-miR-369-5p

• Accession: MIMAT0003801
• Sequence: 10 - aucgaccguguuauauucgc - 29
• Deep sequencing: 1648 reads, 63 experiments
• Evidence: by similarity; MI0000777
• Predicted targets:
  • TargetScanVert:bta-miR-369-5p

Mature sequence bta-miR-369-3p

• Accession: MIMAT0003802
• Sequence: 43 - aauaauacaugguugaucuuu - 63
• Deep sequencing: 5350 reads, 63 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-369-3p

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).