miRBase entry: bta-mir-215

Stem-loop bta-mir-215


Accession
MI0005016
Description
Bos taurus bta-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
9 open access papers mention bta-mir-215
(20 sentences)

Sequence

2234467 reads, 20323 reads per million, 74 experiments
uguacaggaaaAUGACCUAUGAAUUGACAGACAacgugacuaagucugucugucauuucuguaggccaauguucuguau
.((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...))))))))

Structure
u        aaA  A     -   U         -  gug 
 guacagga   UG CCUAU GAA UGACAGACA ac   a
 ||||||||   || ||||| ||| ||||||||| ||    
 uaugucuu   ac ggaug cuu acugucugu ug   c
-        gua  c     u   u         c  aau 


Annotation confidence High
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Genome context
chr16: 24404933-24405011 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-215

Accession MIMAT0003797
Description Bos taurus bta-miR-215 mature miRNA
Sequence 12 - AUGACCUAUGAAUUGACAGACA - 33
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43