miRBase entry: bta-mir-20b

Stem-loop bta-mir-20b


Accession
MI0005015
Description
Bos taurus bta-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
10 open access papers mention bta-mir-20b
(20 sentences)

Sequence

728 reads, 28 reads per million, 57 experiments
aguacCAAAGUGCUCACAGUGCAGGUAguuuuggcagcgcucuacuguagugugggcacuuccaguacu
(((((..(((((((((((.(((((.(((....(((...))))))))))).)))))))))))...)))))

Structure
     -CA           G     G   uuuu   a 
aguac   AAGUGCUCACA UGCAG UAg    ggc  
|||||   ||||||||||| ||||| |||    ||| g
ucaug   uucacgggugu auguc auc    ucg  
     acc           g     -   ----   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 18021463-18021531 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-20b

Accession MIMAT0003796
Description Bos taurus bta-miR-20b mature miRNA
Sequence 6 - CAAAGUGCUCACAGUGCAGGUA - 27
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43