miRBase entry: bta-mir-15b

Stem-loop bta-mir-15b


Accession
MI0005012
Description
Bos taurus bta-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
20 open access papers mention bta-mir-15b
(38 sentences)

Sequence

11319 reads, 173 reads per million, 69 experiments
uugagaccuuaaaguacugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugcgaaucauuauuugcugcucuagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure
u    --a       gua   U       C  C       A   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaag gua ga  u
u    aaa       aaa   c       u  u       c   -  ac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 108321741-108321838 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-15b

Accession MIMAT0003792
Description Bos taurus bta-miR-15b mature miRNA
Sequence 20 - UAGCAGCACAUCAUGGUUUACA - 41
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988