Stem-loop sequence bta-mir-15b

Accession

MI0005012 (change log)

Description

Bos taurus miR-15b stem-loop

Gene family

MIPF0000006; mir-15

Literature search

20 open access papers mention bta-mir-15b
(38 sentences)

Stem-loop

   u    --a       gua   u       c  c      ua   a  ac 
5'  ugag   ccuuaaa   cug agcagca au augguu  cau cu  a
    ||||   |||||||   ||| ||||||| || ||||||  ||| ||  g
3'  acuu   ggaauuu   gau ucgucgu ua uacuaa  gua ga  u
   u    aaa       aaa   c       u  u      gc   -  ac 

Deep sequencing

20940 reads, 211 reads per million, 74 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr1: 108321741-108321838 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000007705 ; SMC4-201; intron 5

  ENSBTAT00000052946 ; SMC4-202; intron 5

Clustered miRNAs

< 10kb from bta-mir-15b

• bta-mir-15b: chr1: 108321741-108321838 [-]
• bta-mir-16b: chr1: 108321598-108321690 [-]

Database links

• EntrezGene:MIR15B
• RNAcentral:URS000075C9FE_9913
• miRBase Tracker:MI0005012

Mature sequence bta-miR-15b

• Accession: MIMAT0003792
• Sequence: 20 - uagcagcacaucaugguuuaca - 41
• Deep sequencing: 19734 reads, 74 experiments
• Evidence: experimental; cloned [1-2]
• Predicted targets:
  • TargetScanVert:bta-miR-15b

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:17306260 "Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland" Gu Z, Eleswarapu S, Jiang H FEBS Lett. 581:981-988(2007).