Stem-loop sequence mmu-mir-490

Accession

MI0005002 (change log)

Symbol

MGI:Mir490

Description

Mus musculus miR-490 stem-loop

Gene family

MIPF0000229; mir-490

Literature search

14 open access papers mention mmu-mir-490
(61 sentences)

Stem-loop

   uggaaaguucauugu      c      --         g   cac  uua 
5'                ucgaca caugga  ucuccaggu ggu   gu   g
                  |||||| ||||||  ||||||||| |||   ||    
3'                aguugu guaccu  ggaggucca cca   ca   a
   ---------------      c      ca         a   ---  uau 

Deep sequencing

3046 reads, 0 reads per million, 42 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr6: 36421742-36421825 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000094551 ; Chrm2-001; intron 2

  OTTMUST00000094559 ; Chrm2-002; intron 2

  ENSMUST00000172278 ; Chrm2-001; intron 2

  ENSMUST00000169004 ; Chrm2-002; intron 2

Database links

• EntrezGene:Mir490
• MGI:Mir490
• RNAcentral:URS000075ACFD_10090
• miRBase Tracker:MI0005002

Mature sequence mmu-miR-490-5p

• Accession: MIMAT0017261
• Sequence: 22 - ccauggaucuccaggugggu - 41
• Deep sequencing: 880 reads, 30 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00004556E5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-490-5p
  • miRDB:mmu-miR-490-5p

Mature sequence mmu-miR-490-3p

• Accession: MIMAT0003780
• Previous IDs: mmu-miR-490
• Sequence: 59 - caaccuggaggacuccaugcug - 80
• Deep sequencing: 2166 reads, 36 experiments
• Evidence: experimental; MPSS [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00001496AE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-490-3p
  • miRDB:mmu-miR-490-3p
  • microrna.org:mmu-miR-490-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).