Stem-loop sequence gga-mir-144

Accession

MI0004996 (change log)

Description

Gallus gallus miR-144 stem-loop

Gene family

MIPF0000093; mir-144

Literature search

7 open access papers mention gga-mir-144
(25 sentences)

Stem-loop

   ccc  c    u   cu g        a         --ag   a 
5'    gc gccc ggg  g auaucauc uauacugua    uuc c
      || |||| |||  | |||||||| |||||||||    ||| u
3'    cg cggg ccc  c uguaguag auaugacau    gag a
   ---  u    u   cu a        -         caca   u 

Deep sequencing

42699 reads, 300 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 5863191-5863275 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-144

• gga-mir-144: chr19: 5863191-5863275 [-]
• gga-mir-451: chr19: 5863036-5863104 [-]

Database links

• EntrezGene:MIR144
• RNAcentral:URS000075DF2A_9031
• miRBase Tracker:MI0004996

Mature sequence gga-miR-144-5p

• Accession: MIMAT0026644
• Sequence: 17 - ggauaucaucauauacuguaag - 38
• Deep sequencing: 39459 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002E92A8_9031
• Predicted targets:
  • TargetScanVert:gga-miR-144-5p
  • miRDB:gga-miR-144-5p

Mature sequence gga-miR-144-3p

• Accession: MIMAT0003776
• Sequence: 53 - cuacaguauagaugauguacuc - 74
• Deep sequencing: 3239 reads, 5 experiments
• Evidence: experimental; cloned [1], Northern [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-144-3p
  • miRDB:gga-miR-144-3p

References

1. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).