Stem-loop sequence gga-mir-451

Accession

MI0004995 (change log)

Description

Gallus gallus miR-451 stem-loop

Gene family

MIPF0000148; mir-451

Literature search

9 open access papers mention gga-mir-451
(16 sentences)

Stem-loop

   acaca      g   g a                 a 
5'      uggcug cag g aaccguuaccauuacug g
        |||||| ||| | |||||||||||||||||  
3'      accgac guc u uuggcaaugguaaugau u
   -----      a   g c                 u 

Deep sequencing

386231 reads, 4.4e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 5863036-5863104 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-451

• gga-mir-144: chr19: 5863191-5863275 [-]
• gga-mir-451: chr19: 5863036-5863104 [-]

Database links

• EntrezGene:MIR451
• RNAcentral:URS000075A76D_9031
• miRBase Tracker:MI0004995

Mature sequence gga-miR-451

• Accession: MIMAT0003775
• Sequence: 18 - aaaccguuaccauuacugaguuu - 40
• Deep sequencing: 385429 reads, 5 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS00002AB26F_9031
• Predicted targets:
  • TargetScanVert:gga-miR-451
  • miRDB:gga-miR-451

References

1. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).