miRBase entry: bmo-mir-283

Stem-loop bmo-mir-283


Accession
MI0004984
Description
Bombyx mori bmo-mir-283 precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
4 open access papers mention bmo-mir-283
(4 sentences)

Sequence

2722 reads, 479 reads per million, 3 experiments
aacguuucccgacUAAAUAUCAGCUGGUAAUUCUgggcuuuauuaauccCAGGCUAUCAGCUGGUAUACAGuuaugauacgua
.((((.((..((((..(((((((((((((..((((((.((....)).)))))).)))))))))))))..))))..)).)))).

Structure
a    u  cc    AA             AU      c  u 
 acgu uc  gacU  AUAUCAGCUGGUA  UCUggg uu a
 |||| ||  ||||  |||||||||||||  |||||| ||  
 ugca ag  uuGA  UAUGGUCGACUAU  GGACcc aa u
a    u  ua    CA             -C      u  u 


Annotation confidence High
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Genome context
NW_004581701.1: 692153-692235 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-283
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-283-5p

Accession MIMAT0004206
Description Bombyx mori bmo-miR-283-5p mature miRNA
Sequence 14 - UAAAUAUCAGCUGGUAAUUCU - 34
Evidence experimental
Illumina [3]
Database links

Mature bmo-miR-283-3p

Accession MIMAT0015235
Description Bombyx mori bmo-miR-283-3p mature miRNA
Sequence 50 - CAGGCUAUCAGCUGGUAUACAG - 71
Evidence experimental
Illumina [3]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148