miRBase entry: bmo-mir-282

Stem-loop bmo-mir-282


Accession
MI0004983
Description
Bombyx mori bmo-mir-282 precursor miRNA
Gene family
MIPF0000150; mir-282

Literature search
3 open access papers mention bmo-mir-282
(10 sentences)

Sequence

124 reads, 27 reads per million, 3 experiments
cgggacuuugACCUAGCCUCUCCUUGGCUUUGUCUGUuucguuaguagcucagACAUAGCCUGAUAGAGGUUACGuuuugucccu
.(((((...(((.((((((((....((((.((((((..............)))))).))))....)))))))).)))..))))).

Structure
c     uuu   C        CCUU    U      Uuucgu 
 gggac   gAC UAGCCUCU    GGCU UGUCUG      u
 |||||   ||| ||||||||    |||| ||||||       
 cccug   uuG AUUGGAGA    CCGA ACAgac      a
u     -uu   C        UAGU    U      ucgaug 


Annotation confidence High
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Genome context
NW_004581722.1: 736220-736304 [-]

Database links

Mature bmo-miR-282-5p

Accession MIMAT0004205
Description Bombyx mori bmo-miR-282-5p mature miRNA
Sequence 11 - ACCUAGCCUCUCCUUGGCUUUGUCUGU - 37
Evidence experimental
cloned [3], Illumina [4]
Database links

Mature bmo-miR-282-3p

Accession MIMAT0015234
Description Bombyx mori bmo-miR-282-3p mature miRNA
Sequence 54 - ACAUAGCCUGAUAGAGGUUACG - 75
Evidence experimental
Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  4. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997