miRBase entry: bmo-mir-276

Stem-loop bmo-mir-276


Accession
MI0004980
Description
Bombyx mori bmo-mir-276 precursor miRNA
Gene family
MIPF0000124; mir-276

Literature search
6 open access papers mention bmo-mir-276
(14 sentences)

Sequence

99692 reads, 18057 reads per million, 3 experiments
cugguaauuaccacuAGCGAGGUAUAGAGUUCCUACGuaugcuaacacugUAGGAACUUCAUACCGUGCUCUuggguuugccaa
.((((((...(((..((((.(((((.((((((((((((........)).)))))))))).))))).))))..)))..)))))).

Structure
c      uua   cu    A     A          -  aug 
 ugguaa   cca  AGCG GGUAU GAGUUCCUAC Gu   c
 ||||||   |||  |||| ||||| |||||||||| ||    
 accguu   ggu  UCGU CCAUA UUCAAGGAUg ca   u
a      -ug   UC    G     C          u  caa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bmo-miR-276-5p

Accession MIMAT0004202
Description Bombyx mori bmo-miR-276-5p mature miRNA
Sequence 16 - AGCGAGGUAUAGAGUUCCUACG - 37
Evidence experimental
Northern [2], RT-PCR [3], Illumina [4]
Database links

Mature bmo-miR-276-3p

Accession MIMAT0015232
Description Bombyx mori bmo-miR-276-3p mature miRNA
Sequence 51 - UAGGAACUUCAUACCGUGCUCU - 72
Evidence experimental
Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148