Stem-loop sequence bmo-mir-276

Accession

MI0004980 (change log)

Description

Bombyx mori miR-276 stem-loop

Gene family

MIPF0000124; mir-276

Literature search

6 open access papers mention bmo-mir-276
(13 sentences)

Stem-loop

   c      uua   cu    a     ag         -  aug 
5'  ugguaa   cca  agcg gguau  aguuccuac gu   c
    ||||||   |||  |||| |||||  ||||||||| ||    
3'  accguu   ggu  ucgu ccaua  ucaaggaug ca   u
   a      -ug   uc    g     cu         u  caa 

Deep sequencing

105250 reads, 1.8e+04 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Database links

• miRBase Tracker:MI0004980

Mature sequence bmo-miR-276-5p

• Accession: MIMAT0004202
• Previous IDs: bmo-miR-276
• Sequence: 16 - agcgagguauagaguuccuacg - 37
• Deep sequencing: 8733 reads, 3 experiments
• Evidence: experimental; Northern [2], RT-PCR [3], Illumina [4]
• Database links:
  • RNAcentral:URS00005D9A90_7091

Mature sequence bmo-miR-276-3p

• Accession: MIMAT0015232
• Previous IDs: bmo-miR-276*
• Sequence: 51 - uaggaacuucauaccgugcucu - 72
• Deep sequencing: 96517 reads, 3 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000602386_7091

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:18977439 "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system" Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y Insect Biochem Mol Biol. 38:1066-1071(2008).
4. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).