miRBase entry: bmo-mir-10

Stem-loop bmo-mir-10


Accession
MI0004973
Description
Bombyx mori bmo-mir-10 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
8 open access papers mention bmo-mir-10
(26 sentences)

Sequence

11239 reads, 1726 reads per million, 3 experiments
agugcccuacaucuACCCUGUAGAUCCGAAUUUGUuugaagugaggcgaCAAAUUCGGUUCUAGAGAGGUUUguguggugcacg
.((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).

Structure
a    c      cu   -  G    U           ugaa 
 gugc cuacau  ACC CU UAGA CCGAAUUUGUu    g
 |||| ||||||  ||| || |||| |||||||||||    u
 cacg ggugug  UGG GA AUCU GGCUUAAACag    g
g    u      UU   A  G    U           cgga 


Annotation confidence High
Do you think this miRNA is real?
Comments
Tong et al erroneously published the reverse complement of the sequence shown here [1].

Genome context
NW_004582018.1: 2516858-2516941 [-]

Database links

Mature bmo-miR-10-5p

Accession MIMAT0004195
Description Bombyx mori bmo-miR-10-5p mature miRNA
Sequence 15 - ACCCUGUAGAUCCGAAUUUGU - 35
Evidence experimental
cloned [3], RT-PCR [4], Illumina [5]
Database links

Mature bmo-miR-10-3p

Accession MIMAT0015226
Description Bombyx mori bmo-miR-10-3p mature miRNA
Sequence 50 - CAAAUUCGGUUCUAGAGAGGUUU - 72
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  4. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  5. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997