Stem-loop sequence bmo-mir-1a

AccessionMI0004969 (change log)
Previous IDsbmo-mir-1
DescriptionBombyx mori miR-1a stem-loop
Gene family MIPF0000038; mir-1
Literature search

12 open access papers mention bmo-mir-1a
(61 sentences)

   a    u     a            c    uuc     gucau 
5'  gccu gcgca guuccgugcuuc uuac   ccaua     u
    |||| ||||| |||||||||||| ||||   |||||     g
3'  cggg cgcgu cgagguaugaag aaug   gguau     u
   g    -     -            a    uaa     acuaa 
Get sequence
Deep sequencing
1138271 reads, 1.54e+05 reads per million, 3 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004582020.1: 5628055-5628139 [-]
Clustered miRNAs
< 10kb from bmo-mir-1a
bmo-mir-1bNW_004582020.1: 5628058-5628136 [+]
bmo-mir-1aNW_004582020.1: 5628055-5628139 [-]
Database links

Mature sequence bmo-miR-1a-5p

Accession MIMAT0015222
Previous IDsbmo-miR-1*;bmo-miR-1a*

16 - 


 - 36

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; Illumina [4]

Mature sequence bmo-miR-1a-3p

Accession MIMAT0004191
Previous IDsbmo-miR-1;bmo-miR-1a

53 - 


 - 74

Get sequence
Deep sequencing1138270 reads, 3 experiments
Evidence experimental; Northern [2], cloned [3], Illumina [4]
Database links


PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).