miRBase entry: bmo-mir-1a

Stem-loop bmo-mir-1a


Accession
MI0004969
Description
Bombyx mori bmo-mir-1a precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
12 open access papers mention bmo-mir-1a
(61 sentences)

Sequence

1080721 reads, 148495 reads per million, 3 experiments
agccuugcgcaaguuCCGUGCUUCCUUACUUCCCAUagucauuguaaucauaUGGAAUGUAAAGAAGUAUGGAGcugcgcgggcg
.((((.(((((.((((((((((((.((((...(((((.............)))))...)))).))))))))))))))))))))).

Structure
a    u     a            C    UUC     gucau 
 gccu gcgca guuCCGUGCUUC UUAC   CCAUa     u
 |||| ||||| |||||||||||| ||||   |||||     g
 cggg cgcgu cGAGGUAUGAAG AAUG   GGUau     u
g    -     -            A    UAA     acuaa 


Annotation confidence Not enough data
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Genome context
NW_004582020.1: 5628055-5628139 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-1a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-1a-5p

Accession MIMAT0015222
Description Bombyx mori bmo-miR-1a-5p mature miRNA
Sequence 16 - CCGUGCUUCCUUACUUCCCAU - 36
Evidence experimental
Illumina [4]

Mature bmo-miR-1a-3p

Accession MIMAT0004191
Description Bombyx mori bmo-miR-1a-3p mature miRNA
Sequence 53 - UGGAAUGUAAAGAAGUAUGGAG - 74
Evidence experimental
Northern [2], cloned [3], Illumina [4]
Database links

References

  1. PubMed ID: 16972323
    Computational prediction of microRNA genes in silkworm genome
    "Tong CZ, Jin YF, Zhang YZ"
    "J Zhejiang Univ Sci B (2006) 7:806-816

  2. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  4. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997