Stem-loop sequence bmo-mir-1a

Accession

MI0004969 (change log)

Previous IDs

bmo-mir-1

Description

Bombyx mori miR-1a stem-loop

Gene family

MIPF0000038; mir-1

Literature search

12 open access papers mention bmo-mir-1a
(61 sentences)

Stem-loop

   a    u     a            c    uuc     gucau 
5'  gccu gcgca guuccgugcuuc uuac   ccaua     u
    |||| ||||| |||||||||||| ||||   |||||     g
3'  cggg cgcgu cgagguaugaag aaug   gguau     u
   g    -     -            a    uaa     acuaa 

Deep sequencing

1138271 reads, 1.54e+05 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582020.1: 5628055-5628139 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-1a

• bmo-mir-1b: NW_004582020.1: 5628058-5628136 [+]
• bmo-mir-1a: NW_004582020.1: 5628055-5628139 [-]

Database links

• miRBase Tracker:MI0004969

Mature sequence bmo-miR-1a-5p

• Accession: MIMAT0015222
• Previous IDs: bmo-miR-1*;bmo-miR-1a*
• Sequence: 16 - ccgugcuuccuuacuucccau - 36
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [4]

Mature sequence bmo-miR-1a-3p

• Accession: MIMAT0004191
• Previous IDs: bmo-miR-1;bmo-miR-1a
• Sequence: 53 - uggaauguaaagaaguauggag - 74
• Deep sequencing: 1138270 reads, 3 experiments
• Evidence: experimental; Northern [2], cloned [3], Illumina [4]
• Database links:
  • RNAcentral:URS00005942EF_7091

References

1. PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3. PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
4. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).