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miRBase |
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Stem-loop sequence mmu-mir-652 |
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Accession | MI0004965 (change log) | ||||
Symbol | MGI:Mir652 | ||||
Description | Mus musculus miR-652 stem-loop | ||||
Gene family | MIPF0000333; mir-652 | ||||
Literature search |
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12 open access papers mention mmu-mir-652 | ||||
Stem-loop |
aggaaca a gaggg ca g 5' gcu uguacugcacaacccuag ggugccauuca ua a ||| |||||||||||||||||| ||||||||||| || g 3' cga augugacguguugggauc ccgcgguaagu au u -cacauc c ----a ua a |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The predominant miRNA cloned by Langraf et al. has a 3' terminal U residue, which is incompatible with the genome sequence [2]. |
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Genome context |
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Database links |
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Mature sequence mmu-miR-652-5p |
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Accession | MIMAT0017260 |
Previous IDs | mmu-miR-652* |
Sequence |
21 - caacccuaggagggggugccauuc - 44 |
Deep sequencing | 423 reads, 68 experiments |
Evidence | experimental; 454 [4], Illumina [5] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-652-3p |
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Accession | MIMAT0003711 |
Previous IDs | mmu-miR-652 |
Sequence |
61 - aauggcgccacuaggguugug - 81 |
Deep sequencing | 128013 reads, 107 experiments |
Evidence | experimental; cloned [2], Illumina [3,5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16566924
"Identification of new central nervous system specific mouse microRNAs"
FEBS Lett. 580:2195-2200(2006).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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4 |
PMID:20668074
"Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68"
J Virol. 84:10266-10275(2010).
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5 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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