Stem-loop sequence xtr-mir-20b

Accession

MI0004961 (change log)

Description

Xenopus tropicalis miR-20b stem-loop

Gene family

MIPF0000001; mir-17

Stem-loop

   -     -ucca           g     g   uugua 
5'  gcagu     aagugcucaua ugcag uag     u
    |||||     ||||||||||| ||||| |||     u
3'  cguca     uucacggguau auguc auc     g
   u     ugaca           a     -   uugua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr8: 47197934-47198007 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-20b

• xtr-mir-106: chr8: 47198219-47198281 [-]
• xtr-mir-18b: chr8: 47198092-47198169 [-]
• xtr-mir-20b: chr8: 47197934-47198007 [-]
• xtr-mir-19b-1: chr8: 47197821-47197893 [-]
• xtr-mir-92a-2: chr8: 47197691-47197763 [-]
• xtr-mir-363: chr8: 47197557-47197643 [-]

Database links

• miRBase Tracker:MI0004961

Mature sequence xtr-miR-20b

• Accession: MIMAT0003707
• Sequence: 8 - caaagugcucauagugcagguag - 30
• Evidence: by similarity; MI0001453
• Predicted targets:
  • TargetScanVert:xtr-miR-20b