Stem-loop sequence xtr-mir-20a

Accession

MI0004911 (change log)

Description

Xenopus tropicalis miR-20a stem-loop

Gene family

MIPF0000001; mir-17

Stem-loop

   --   aa  ug     -a          a      g   uu uu 
5'   gcu  ag  gugcu  aagugcuuau gugcag uag  u  c
     |||  ||  |||||  |||||||||| |||||| |||  |   
3'   cga  uc  cauga  uucacgagua uacguc auc  a  u
   gu   --  cu     aa          a      -   uu ug 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr2: 120019984-120020067 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-20a

• xtr-mir-17: chr2: 120020382-120020468 [-]
• xtr-mir-18a: chr2: 120020254-120020340 [-]
• xtr-mir-19a: chr2: 120020112-120020192 [-]
• xtr-mir-20a: chr2: 120019984-120020067 [-]
• xtr-mir-19b-2: chr2: 120019859-120019937 [-]
• xtr-mir-92a-1: chr2: 120019740-120019817 [-]

Database links

• miRBase Tracker:MI0004911

Mature sequence xtr-miR-20a-5p

• Accession: MIMAT0003669
• Previous IDs: xtr-miR-20a
• Sequence: 14 - uaaagugcuuauagugcagguag - 36
• Evidence: by similarity; MI0001907
• Predicted targets:
  • TargetScanVert:xtr-miR-20a-5p

Mature sequence xtr-miR-20a-3p

• Accession: MIMAT0003670
• Previous IDs: xtr-miR-20a*
• Sequence: 51 - acugcauaaugagcacuuaaa - 71
• Evidence: by similarity; MI0001907
• Predicted targets:
  • TargetScanVert:xtr-miR-20a-3p