miRBase entry: xtr-mir-148a

Stem-loop xtr-mir-148a


Accession
MI0004905
Description
Xenopus tropicalis xtr-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148


Sequence

uagucuuuuaaaucaaaguucugugacacuuagacucugaauaugauagcagUCAGUGCACUACAGAACUUUGUuuugggagucug
(((.((((((((.((((((((((((.((((..(((((((.......))).))))))))...)))))))))))).)))))))).)))

Structure
   u        u            --a    ua    -   aa 
uag cuuuuaaa caaaguucugug   cacu  gacu cug  u
||| |||||||| ||||||||||||   ||||  |||| |||  a
guc gaggguuu GUUUCAAGACAU   GUGA  CUga gau  u
   u        U            CAC    --    c   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 33524404-33524489 [+]

Database links

Mature xtr-miR-148a

Accession MIMAT0003664
Description Xenopus tropicalis xtr-miR-148a mature miRNA
Sequence 53 - UCAGUGCACUACAGAACUUUGU - 74
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112