Stem-loop sequence xtr-mir-24a

Accession

MI0004895 (change log)

Description

Xenopus tropicalis miR-24a stem-loop

Gene family

MIPF0000041; mir-24

Stem-loop

          g   a         ua     ucuau 
5' cucuugu ccu cugaacuga  ucagu     u
   ||||||| ||| |||||||||  |||||      
3' gaggaca gga gacuugacu  gguca     u
          a   c         -c     cacac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr1: 123464315-123464381 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-24a

• xtr-mir-23b: chr1: 123463474-123463561 [+]
• xtr-mir-27b: chr1: 123463698-123463793 [+]
• xtr-mir-24a: chr1: 123464315-123464381 [+]

Database links

• miRBase Tracker:MI0004895

Mature sequence xtr-miR-24a-5p

• Accession: MIMAT0003653
• Previous IDs: xtr-miR-189
• Sequence: 6 - gugccuacugaacugauaucagu - 28
• Evidence: by similarity; MI0000231
• Predicted targets:
  • TargetScanVert:xtr-miR-24a-5p

Mature sequence xtr-miR-24a-3p

• Accession: MIMAT0003654
• Previous IDs: xtr-miR-24a
• Sequence: 43 - uggcucaguucagcaggaacag - 64
• Evidence: by similarity; MI0000231
• Predicted targets:
  • TargetScanVert:xtr-miR-24a-3p