Stem-loop xtr-let-7c

Accession

MI0004886

Description

Xenopus tropicalis xtr-let-7c precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

ugugugcauccagguUGAGGUAGUAGGUUGUAUGGUUuagaaugacacccugggaguuaacuguacaaccuucuagcuuuccuuggagcucacu
.(((.((.((((((..(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))..)))))))).))).

Structure

u   u  a      uU   G   U             uag   ga ac 
 gug gc uccagg  GAG UAG AGGUUGUAUGGUU   aau  c  c
 ||| || ||||||  ||| ||| |||||||||||||   |||  |   
 cac cg agguuc  uuc auc uccaacaugucaa   uug  g  c
u   u  -      cu   g   u             ---   ag gu 

Annotation confidence Not enough data

Genome context

chr2: 23121720-23121813 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-let-7c

Mature xtr-let-7c

• Accession: MIMAT0003644
• Description: Xenopus tropicalis xtr-let-7c mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUGUAUGGUU - 37
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112