Stem-loop sequence xtr-mir-215

Accession

MI0004868 (change log)

Description

Xenopus tropicalis miR-215 stem-loop

Gene family

MIPF0000063; mir-192

Stem-loop

   --   -u     c     gga  a     -          c  cuucca 
5'   aac  gguaa cagga   ug ccuau gaaaugacag ca      u
     |||  ||||| |||||   || ||||| |||||||||| ||      a
3'   uug  ucguu gucuu   ac ggaug cuuuacuguc gu      c
   ag   uu     a     aua  c     u          u  acaaac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr5: 6916154-6916250 [+]
• Overlapping transcripts:

  antisense

  ENSXETT00000064574 ; iars2-202; intron 12

  ENSXETT00000005915 ; iars2-201; intron 12

Clustered miRNAs

< 10kb from xtr-mir-215

• xtr-mir-194-1: chr5: 6915454-6915533 [+]
• xtr-mir-215: chr5: 6916154-6916250 [+]

Database links

• miRBase Tracker:MI0004868

Mature sequence xtr-miR-215

• Accession: MIMAT0003628
• Sequence: 18 - augaccuaugaaaugacagcc - 38
• Evidence: by similarity; MI0001371
• Predicted targets:
  • TargetScanVert:xtr-miR-215