Stem-loop sequence xtr-mir-202-1

Accession

MI0004860 (change log)

Description

Xenopus tropicalis miR-202-1 stem-loop

Gene family

MIPF0000121; mir-202

Stem-loop

   --   -     u  u           -a   a        aaaa 
5'   cuc gcugu cc uuuuccuaugc  uau ccucuuug    a
     ||| ||||| || |||||||||||  ||| ||||||||    u
3'   gag cgacg gg aaaaggguacg  aua ggggaaau    g
   cc   u     c  u           gg   c        guaa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr7: 18586257-18586343 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-202-1

• xtr-mir-202-2: chr7: 18578547-18578633 [+]
• xtr-mir-202-1: chr7: 18586257-18586343 [+]

Database links

• miRBase Tracker:MI0004860

Mature sequence xtr-miR-202-5p

• Accession: MIMAT0003620
• Previous IDs: xtr-miR-202*
• Sequence: 14 - uuuccuaugcauauaccucuuu - 35
• Evidence: by similarity; MI0002040
• Predicted targets:
  • TargetScanVert:xtr-miR-202-5p

Mature sequence xtr-miR-202-3p

• Accession: MIMAT0003621
• Previous IDs: xtr-miR-202
• Sequence: 51 - aggggcauagggcaugggaaaa - 72
• Evidence: by similarity; MI0002040
• Predicted targets:
  • TargetScanVert:xtr-miR-202-3p