miRBase entry: xtr-mir-199a

Stem-loop xtr-mir-199a

Accession

MI0004859

Description

Xenopus tropicalis xtr-mir-199a precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

aagaaccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugcuguugUACAGUAGUCUGCACAUUGGUUagacugggcaugggacag
..(..(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).))))).))..)..

Structure

aa aa  -     c   gcC       U        C   UCag    a 
  g  cc ugcuc guc   CCAGUGU CAGACUAC UGU    gaca u
  |  || ||||| |||   ||||||| |||||||| |||    ||||  
  c  gg acggg cag   GGUUACA GUCUGAUG ACA    uugu g
ga ag  u     u   aUU       C        -   --Ug    c

Annotation confidence Not enough data

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Genome context

chr4: 97341496-97341591 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-199a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-199a-5p

Accession	MIMAT0003618
Description	Xenopus tropicalis xtr-miR-199a-5p mature miRNA
Sequence	19 - CCCAGUGUUCAGACUACCUGUUC - 41
Evidence	experimental Northern [1]

Mature xtr-miR-199a-3p

Accession	MIMAT0003619
Description	Xenopus tropicalis xtr-miR-199a-3p mature miRNA
Sequence	57 - UACAGUAGUCUGCACAUUGGUU - 78
Evidence	not_experimental

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112