miRBase entry: xtr-mir-194-1

Stem-loop xtr-mir-194-1


Accession
MI0004857
Description
Xenopus tropicalis xtr-mir-194-1 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

uaguguguaucaggUGUAACAGCAACUCCAUGUGGAcuuguccguauuccaguggagaugcuguuacuuuugaugggcac
..((((.(((((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))))).))))

Structure
ua    g       U         A      G    cuug 
  gugu uaucagg GUAACAGCA CUCCAU UGGA    u
  |||| ||||||| ||||||||| |||||| ||||    c
  cacg guaguuu cauugucgu gaggug accu    c
--    g       u         a      -    uaug 


Annotation confidence Not enough data
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Genome context
chr5: 6915454-6915533 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-194

Accession MIMAT0003617
Description Xenopus tropicalis xtr-miR-194 mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112