miRBase entry: xtr-mir-192

Stem-loop xtr-mir-192

Accession

MI0004855

Description

Xenopus tropicalis xtr-mir-192 precursor miRNA

Gene family

MIPF0000063; mir-192

Sequence

gaguguacgggccuAUGACCUAUGAAUUGACAGCCaguggaugugaagucugccugucaauucuguaggccacagguucguccaccu
..(((.((((((((.((.(((((((((((((((...((((((.....)))))))))))))))).))))).)).)))))))).)))..

Structure

ga   u        A  A     -          CCa      g 
  gug acgggccu UG CCUAU GAAUUGACAG   guggau u
  ||| |||||||| || ||||| ||||||||||   |||||| g
  cac ugcuugga ac ggaug cuuaacuguc   cgucug a
uc   c        c  c     u          ---      a

Annotation confidence Not enough data

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Genome context

chr4: 38493641-38493727 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-192

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-192

Accession	MIMAT0003615
Description	Xenopus tropicalis xtr-miR-192 mature miRNA
Sequence	15 - AUGACCUAUGAAUUGACAGCC - 35
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112