Stem-loop sequence xtr-mir-182

Accession

MI0004851 (change log)

Description

Xenopus tropicalis miR-182 stem-loop

Gene family

MIPF0000116; mir-182

Stem-loop

   a  g   ----    u   a   u       u -g      uca      ugag  a 
5'  gu gcu    ucuc ggc gug uuggcaa g  uagaac   cacugg    cu u
    || |||    |||| ||| ||| ||||||| |  ||||||   ||||||    ||  
3'  cg cga    aggg ccg uau aaccguu c  aucuug   guggcc    ga g
   a  a   aaua    u   g   c       - ag      ---      --ua  a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr3: 77404446-77404550 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-182

• xtr-mir-183: chr3: 77399646-77399742 [+]
• xtr-mir-96: chr3: 77400813-77400887 [+]
• xtr-mir-182: chr3: 77404446-77404550 [+]

Database links

• miRBase Tracker:MI0004851

Mature sequence xtr-miR-182-5p

• Accession: MIMAT0003610
• Previous IDs: xtr-miR-182
• Sequence: 20 - uuuggcaaugguagaacucaca - 41
• Evidence: by similarity; MI0001368
• Predicted targets:
  • TargetScanVert:xtr-miR-182-5p

Mature sequence xtr-miR-182-3p

• Accession: MIMAT0003611
• Previous IDs: xtr-miR-182*
• Sequence: 64 - ugguucuagacuugccaacua - 84
• Evidence: by similarity; MI0001368
• Predicted targets:
  • TargetScanVert:xtr-miR-182-3p