miRBase entry: xtr-mir-142-1

Stem-loop xtr-mir-142-1


Accession
MI0004842
Description
Xenopus tropicalis xtr-mir-142-1 precursor miRNA
Gene family
MIPF0000084; mir-142


Sequence

cagugcagccaccCAUAAAGUAGAAAGCACUACuagacaggacugaacgcUGUAGUGUUUCCUACUUUAUGGAugaguguacuggg
(((((((..((.(((((((((((.(((((((((.((.(.(.......))))))))))))).))))))))))).))..)))))))..

Structure
--       gc  c           A         u  a a ga 
  cagugca  ca cCAUAAAGUAG AAGCACUAC ag c g  c
  |||||||  || ||||||||||| ||||||||| || | |  u
  gucaugu  gu GGUAUUUCAUC UUUGUGAUG Uc g c  g
gg       ga  A           C         -  - - aa 


Annotation confidence Not enough data
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Genome context
chr2: 38445580-38445665 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-142-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-142-5p

Accession MIMAT0003602
Description Xenopus tropicalis xtr-miR-142-5p mature miRNA
Sequence 14 - CAUAAAGUAGAAAGCACUAC - 33
Evidence experimental
Northern [1]

Mature xtr-miR-142-3p

Accession MIMAT0003603
Description Xenopus tropicalis xtr-miR-142-3p mature miRNA
Sequence 51 - UGUAGUGUUUCCUACUUUAUGGA - 73
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112