Stem-loop sequence xtr-mir-130b

Accession

MI0004833 (change log)

Description

Xenopus tropicalis miR-130b stem-loop

Gene family

MIPF0000034; mir-130

Stem-loop

   cc c    ca       cc         a  g  gca 
5'   g cuga  cucuuuc  uguugcacu cu ug   g
     | ||||  |||||||  ||||||||| || ||    
3'   c gacu  gggaaag  guaacguga ga au   u
   gu u    ac       ua         c  a  aag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr1: 145394707-145394782 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-130b

• xtr-mir-130c: chr1: 145403553-145403623 [-]
• xtr-mir-301-2: chr1: 145402708-145402780 [-]
• xtr-mir-454: chr1: 145396839-145396941 [-]
• xtr-mir-130b: chr1: 145394707-145394782 [-]

Database links

• miRBase Tracker:MI0004833

Mature sequence xtr-miR-130b

• Accession: MIMAT0003593
• Sequence: 48 - cagugcaaugaugaaagggcau - 69
• Evidence: by similarity; MI0001986
• Predicted targets:
  • TargetScanVert:xtr-miR-130b