miRBase entry: xtr-mir-27a

Stem-loop xtr-mir-27a


Accession
MI0004809
Description
Xenopus tropicalis xtr-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

cggcggcccagggcuuagcuguauugugagcacugucacucucgcaccugUUCACAGUGGCUAAGUUCCGCgccuc
.((((.(...((((((((((..((((((((((.(((.......)))..)))))))))))))))))))).)))))..

Structure
-c    g cca          gu          -c   ca 
  ggcg c   gggcuuagcu  auugugagca  ugu  c
  |||| |   ||||||||||  ||||||||||  |||  u
  ccgC G   CUUGAAUCGG  UGACACUUgu  acg  c
cu    - --C          --          cc   cu 


Annotation confidence Not enough data
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Genome context
chr3: 129999278-129999353 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from xtr-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-27a

Accession MIMAT0003570
Description Xenopus tropicalis xtr-miR-27a mature miRNA
Sequence 51 - UUCACAGUGGCUAAGUUCCGC - 71
Evidence not_experimental

References