Stem-loop sequence xtr-mir-19a

Accession

MI0004804 (change log)

Description

Xenopus tropicalis miR-19a stem-loop

Gene family

MIPF0000011; mir-19

Stem-loop

   g   u  u                 --      ---    ag 
5'  cag cu cuguuaguuuugcauag  uugcac   uaca  a
    ||| || |||||||||||||||||  ||||||   ||||  a
3'  guc ga gguagucaaaacguauc  aacgug   augu  a
   -   c  c                 ua      uug    aa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Xenopus_tropicalis_v9.1; GCA_000004195.3): chr2: 120020112-120020192 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from xtr-mir-19a

• xtr-mir-17: chr2: 120020382-120020468 [-]
• xtr-mir-18a: chr2: 120020254-120020340 [-]
• xtr-mir-19a: chr2: 120020112-120020192 [-]
• xtr-mir-20a: chr2: 120019984-120020067 [-]
• xtr-mir-19b-2: chr2: 120019859-120019937 [-]
• xtr-mir-92a-1: chr2: 120019740-120019817 [-]

Database links

• miRBase Tracker:MI0004804

Mature sequence xtr-miR-19a

• Accession: MIMAT0003566
• Sequence: 49 - ugugcaaaucuaugcaaaacuga - 71
• Evidence: by similarity; MI0000073
• Predicted targets:
  • TargetScanVert:xtr-miR-19a