miRBase entry: xtr-mir-7-2

Stem-loop xtr-mir-7-2


Accession
MI0004792
Description
Xenopus tropicalis xtr-mir-7-2 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

gaggugcaggcugacucuuugUGGAAGACUAGUGAUUUUGUUGuuguaagccuuauugcaugacaacaagucacagucugccucacagugcccagcaauauca
((..(((.(((..(((...((.((.(((((.(((((((.((((((((((......)))))..))))))))))))))))).)).)).))))))..)))...)).

Structure
-  -gg   -a   ug   cuu  U  A     A       U     --     gc 
 ga   ugc  ggc  acu   ug GG AGACU GUGAUUU GUUGu  uguaa  c
 ||   |||  |||  |||   || || ||||| ||||||| |||||  |||||   
 cu   acg  ccg  uga   ac cc ucuga cacugaa caaca  acguu  u
a  aua   ac   --   --c  u  g     -       -     gu     au 


Annotation confidence Not enough data
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Genome context
chr3: 100078440-100078542 [-]

Database links

Mature xtr-miR-7

Accession MIMAT0003552
Description Xenopus tropicalis xtr-miR-7 mature miRNA
Sequence 22 - UGGAAGACUAGUGAUUUUGUUG - 43
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112