Stem-loop sequence dre-mir-738

Accession

MI0004784 (change log)

Description

Danio rerio miR-738 stem-loop

Gene family

MIPF0001514; mir-738

Literature search

1 open access papers mention dre-mir-738
(1 sentences)

Stem-loop

      ac   -          ----  cu       a       cu      g 
5' gcu  ggc ccgcgucggg    ac  cucgucu gcgacuu  ccccuc g
   |||  ||| ||||||||||    ||  ||||||| |||||||  ||||||  
3' cgg  ccg ggcgcggccc    ug  gagcggg cgcugga  ggggag g
      cu   u          cucc  -u       g       ug      g 

Deep sequencing

2740 reads, 1.3e+05 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 68564061-68564158 [-]
• Overlapping transcripts:

  antisense

  ENSDART00000130501 ; BX548011.3-201; intron 2

Database links

• EntrezGene:mir738
• EntrezGene:mir738
• RNAcentral:URS000075EF2B_7955
• miRBase Tracker:MI0004784

Mature sequence dre-miR-738

• Accession: MIMAT0003769
• Sequence: 1 - gcuacggcccgcgucgggaccuc - 23
• Deep sequencing: 2199 reads, 16 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075B07F_7955
• Predicted targets:
  • TargetScanFish:dre-miR-738

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).