miRBase entry: dre-mir-731

Stem-loop dre-mir-731


Accession
MI0004776
Description
Danio rerio dre-mir-731 precursor miRNA
Gene family
MIPF0001354; mir-731

Literature search
1 open access papers mention dre-mir-731
(7 sentences)

Sequence

92369 reads, 7034 reads per million, 11 experiments
ugaugcugaucuggAAUGACACGUUUUCUCCCGGAUCGccagaaauauguuucgccaccgggaacuucgugucagccaagauuggcauca
((((((((((((((..(((((((.....((((((...((..((((....))))))..))))))....))))))).)).))))))))))))

Structure
            -  AA       UUUUC      AUC  ca    u 
ugaugcugaucu gg  UGACACG     UCCCGG   Gc  gaaa a
|||||||||||| ||  |||||||     ||||||   ||  ||||  
acuacgguuaga cc  acugugc     agggcc   cg  cuuu u
            a  -g       -uuca      -ac  --    g 


Annotation confidence High
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Genome context
chr8: 26082534-26082623 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-731
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-731

Accession MIMAT0003761
Description Danio rerio dre-miR-731 mature miRNA
Sequence 15 - AAUGACACGUUUUCUCCCGGAUCG - 38
Evidence experimental
cloned [1], Northern [1]
Database links
Predicted targets

References

  1. PubMed ID: 16698962
    Cloning and expression of new microRNAs from zebrafish
    "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
    "Nucleic Acids Res (2006) 34:2558-2569