Stem-loop sequence bta-mir-31

Accession

MI0004762 (change log)

Description

Bos taurus miR-31 stem-loop

Gene family

MIPF0000064; mir-31

Literature search

12 open access papers mention bta-mir-31
(44 sentences)

Stem-loop

   uccuguaacuu   acu      ga     g   c         -u   gaa 
5'            gga   ggagag  ggcaa aug uggcauagc  guu   c
              |||   ||||||  ||||| ||| |||||||||  |||    
3'            ccu   ucucuc  ccguu uac accguaucg  caa   u
   ----------g   -gu      ua     a   a         uc   gcg 

Deep sequencing

31616 reads, 229 reads per million, 68 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr8: 22619494-22619587 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR31
• RNAcentral:URS000075BBB7_9913
• miRBase Tracker:MI0004762

Mature sequence bta-miR-31

• Accession: MIMAT0003548
• Sequence: 25 - aggcaagaugcuggcauagcu - 45
• Deep sequencing: 31304 reads, 68 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-31

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).