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miRBase |
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Stem-loop sequence bta-mir-30b |
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Accession | MI0004761 (change log) | |||||
Description | Bos taurus miR-30b stem-loop | |||||
Gene family | MIPF0000005; mir-30 | |||||
Literature search |
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27 open access papers mention bta-mir-30b | |||||
Stem-loop |
- uuu cau u -a ua ac 5' ccaag ucaguu guaaacaucc ac cucagcug ac a ||||| |||||| |||||||||| || |||||||| || 3' gguuc agucga cauuuguagg ug gggucggc ug c a --- cuu - ga -- ag |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
High-throughput sequencing suggests that the dominant miRNA arises from the 3' arm of this precursor [2], in contrast to earlier cloning studies. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence bta-miR-30b-5p |
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Accession | MIMAT0003547 |
Previous IDs | bta-miR-30b |
Sequence |
17 - uguaaacauccuacacucagcu - 38 |
Deep sequencing | 61211 reads, 77 experiments |
Evidence | experimental; cloned [1-2], Illumina [3] |
Predicted targets |
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Mature sequence bta-miR-30b-3p |
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Accession | MIMAT0012534 |
Sequence |
55 - cugggagguggauguuuacuu - 75 |
Deep sequencing | 216 reads, 33 experiments |
Evidence | experimental; Illumina [3] |
Predicted targets |
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References |
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1 |
PMID:17105755
"Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
Physiol Genomics. 29:35-43(2007).
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2 |
PMID:17306260
"Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland"
FEBS Lett. 581:981-988(2007).
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3 |
PMID:19633723
"Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
PLoS One. 4:e6349(2009).
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