miRBase entry: bta-mir-199a-1

Stem-loop bta-mir-199a-1


Accession
MI0004758
Description
Bos taurus bta-mir-199a-1 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
24 open access papers mention bta-mir-199a-1
(81 sentences)

Sequence

309387 reads, 3207 reads per million, 67 experiments
uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggcaaggg
.................(((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))).

Structure
uggaagcuucuggagau   -    c   gcC       U        C   U  --  ac 
                 ccu gcuc guc   CCAGUGU CAGACUAC UGU ca  gg  a
                 ||| |||| |||   ||||||| |||||||| ||| ||  ||   
                 gga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
----------------g   a    u   AUU       C        -   u  ug  gu 


Annotation confidence High
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Genome context
chr16: 40646156-40646259 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-199a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-199a-5p

Accession MIMAT0003544
Description Bos taurus bta-miR-199a-5p mature miRNA
Sequence 31 - CCCAGUGUUCAGACUACCUGUU - 52
Evidence experimental
cloned [1-2]

Mature bta-miR-199a-3p

Accession MIMAT0003746
Description Bos taurus bta-miR-199a-3p mature miRNA
Sequence 70 - ACAGUAGUCUGCACAUUGGUUA - 91
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90