miRBase entry: bta-mir-145

Stem-loop bta-mir-145


Accession
MI0004756
Description
Bos taurus bta-mir-145 precursor miRNA
Gene family
MIPF0000079; mir-145

Literature search
19 open access papers mention bta-mir-145
(53 sentences)

Sequence

209277 reads, 2141 reads per million, 67 experiments
caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggauuccuggaaauacuguucuugaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure
c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 


Annotation confidence High
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Genome context
chr7: 63080500-63080587 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-145

Accession MIMAT0003542
Description Bos taurus bta-miR-145 mature miRNA
Sequence 16 - GUCCAGUUUUCCCAGGAAUCCCU - 38
Evidence experimental
cloned [1-3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343