Stem-loop sequence bta-mir-128-1

Accession

MI0004755 (change log)

Previous IDs

bta-mir-128a;bta-mir-128

Description

Bos taurus miR-128-1 stem-loop

Gene family

MIPF0000048; mir-128

Literature search

7 open access papers mention bta-mir-128-1
(16 sentences)

Stem-loop

   u    u      uuc       uag      cu       u 
5'  gagc guugga   ggggccg   cacugu  gagaggu u
    |||| ||||||   |||||||   ||||||  |||||||  
3'  uucg cgacuu   cucuggc   gugaca  cucuuua a
   c    u      uuu       caa      --       c 

Deep sequencing

22350 reads, 119 reads per million, 74 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr2: 62228129-62228210 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000017695 ; R3HDM1-201; intron 18

Database links

• EntrezGene:MIR128-1
• RNAcentral:URS00002D9CBA_9913
• miRBase Tracker:MI0004755

Mature sequence bta-miR-128

• Accession: MIMAT0003541
• Previous IDs: bta-miR-128a
• Sequence: 50 - ucacagugaaccggucucuuu - 70
• Deep sequencing: 44102 reads, 74 experiments
• Evidence: experimental; Array [2], qRT-PCR [2], cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-128

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).