miRBase entry: bta-mir-125b-1

Stem-loop bta-mir-125b-1


Accession
MI0004753
Description
Bos taurus bta-mir-125b-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
35 open access papers mention bta-mir-125b-1
(118 sentences)

Sequence

102405 reads, 1129 reads per million, 77 experiments
cgcgcgccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagucgcgcc
.(((((.(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).))).))))).

Structure
c     c   u  -a    U    C           Au     c 
 gcgcg cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||| ||| ||  |||| |||| |||||||||||  ||||| g
 cgcgc gag gu  aggg uucu ggauugggcac  uaaau u
c     u   c  cg    -    c           -c     u 


Annotation confidence High
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Genome context
chr15: 33484663-33484750 [-]

Database links

Mature bta-miR-125b

Accession MIMAT0003539
Description Bos taurus bta-miR-125b mature miRNA
Sequence 15 - UCCCUGAGACCCUAACUUGUGA - 36
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343