miRBase entry: bta-mir-221

Stem-loop bta-mir-221


Accession
MI0004743
Description
Bos taurus bta-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
22 open access papers mention bta-mir-221
(60 sentences)

Sequence

122080 reads, 1360 reads per million, 71 experiments
ccaacauccaggucuagggcaugaaccuggcauacaauguagauuucuguguuuguugagcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccuggaaacacguucuu
......(((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))...........

Structure
-----ccaaca       cuag   a    -       u         auuu    -    g 
           uccaggu    ggc ugaa ccuggca acaauguag    cugu guuu  
           |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
           aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca cgag  
uucuugcacaa       ----   g    U       C         ----    a    u 


Annotation confidence Not enough data
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Genome context
chrX: 104688654-104688763 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-221

Accession MIMAT0003529
Description Bos taurus bta-miR-221 mature miRNA
Sequence 65 - AGCUACAUUGUCUGCUGGGUUU - 86
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43