miRBase entry: bta-mir-21

Stem-loop bta-mir-21


Accession
MI0004742
Description
Bos taurus bta-mir-21 precursor miRNA
Gene family
MIPF0000060; mir-21

Literature search
60 open access papers mention bta-mir-21
(325 sentences)

Sequence

1853230 reads, 17881 reads per million, 78 experiments
ugucgggUAGCUUAUCAGACUGAUGUUGACUguugaaucucauggcAACAGCAGUCGAUGGGCUGUCUgaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure
                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG CUgu ga  
|||||||||||||||| ||||| ||||| |||| || u
acagUCUGUCGGGUAG CUGAC ACAAc ggua cu  
                -     G     -    -  c 


Annotation confidence High
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Genome context
chr19: 11138471-11138542 [+]

Database links

Mature bta-miR-21-5p

Accession MIMAT0003528
Description Bos taurus bta-miR-21-5p mature miRNA
Sequence 8 - UAGCUUAUCAGACUGAUGUUGACU - 31
Evidence experimental
cloned [1-3]

Mature bta-miR-21-3p

Accession MIMAT0003745
Description Bos taurus bta-miR-21-3p mature miRNA
Sequence 47 - AACAGCAGUCGAUGGGCUGUCU - 68
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343