Stem-loop sequence bta-mir-20a

Accession

MI0004741 (change log)

Description

Bos taurus miR-20a stem-loop

Gene family

MIPF0000001; mir-17

Literature search

22 open access papers mention bta-mir-20a
(93 sentences)

Stem-loop

       c   -a                 g   -  uu 
5' guag acu  aagugcuuauagugcag uag ug  u
   |||| |||  ||||||||||||||||| ||| ||   
3' cguc uga  uucacgaguauuacguc auc au  a
       a   aa                 -   u  ug 

Deep sequencing

8591 reads, 30.1 reads per million, 73 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 66421687-66421757 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-20a

• bta-mir-17: chr12: 66421236-66421319 [+]
• bta-mir-18a: chr12: 66421379-66421449 [+]
• bta-mir-19a: chr12: 66421518-66421599 [+]
• bta-mir-20a: chr12: 66421687-66421757 [+]
• bta-mir-19b: chr12: 66421815-66421901 [+]
• bta-mir-92a-1: chr12: 66421937-66422014 [+]

Database links

• EntrezGene:MIR20A
• RNAcentral:URS0000507C9B_9913
• miRBase Tracker:MI0004741

Mature sequence bta-miR-20a

• Accession: MIMAT0003527
• Sequence: 8 - uaaagugcuuauagugcagguag - 30
• Deep sequencing: 8408 reads, 73 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-20a

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).