Accession
MI0004729
Description
Physcomitrella patens
ppt-MIR390c precursor miRNA
Gene family
MIPF0000101;
MIR390
Literature search
3 open access papers mention ppt-MIR390c
(57 sentences)
(57 sentences)
Sequence
gguauaauuacaGAGCUCAGGAGGGAUAGCGCCcaucucagucuuuuuuagcauccaauugaaaugguuaacauuccuuuggauagcuagacggcgaagcauggCGCUGUCCAUUCUGAGCAUUGcauuuguacc
(((((((...(((.((((((((.((((((((((.((((..(((...((((((((((((..(((.((.....)))))..)))))).)))))).)))..)).)))))))))))).)))))))).)))...)))))))
(((((((...(((.((((((((.((((((((((.((((..(((...((((((((((((..(((.((.....)))))..)))))).)))))).)))..)).)))))))))))).)))))))).)))...)))))))
Structure
uua A G c - ca uuu - uu a g
gguauaa caG GCUCAGGA GGAUAGCGCC au cu guc uuuagc auccaa gaa ug u
||||||| ||| |||||||| |||||||||| || || ||| |||||| |||||| ||| || u
ccauguu GUU CGAGUCUU CCUGUCGCgg ua ga cgg agaucg uagguu cuu ac a
uac A A - c ag --c a uc - a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
Chr07: 9880127-9880261 [+]
Database links
Mature ppt-miR390c-5p
| Accession | MIMAT0003919 |
| Description | Physcomitrella patens ppt-miR390c-5p mature miRNA |
| Sequence | 13 - GAGCUCAGGAGGGAUAGCGCC - 33 |
| Evidence |
experimental
454 [3] |
Mature ppt-miR390c-3p
| Accession | MIMAT0004327 |
| Description | Physcomitrella patens ppt-miR390c-3p mature miRNA |
| Sequence | 105 - CGCUGUCCAUUCUGAGCAUUG - 125 |
| Evidence |
experimental
cloned [2] |
References
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