miRBase entry: ppt-MIR1223a

Stem-loop ppt-MIR1223a


Accession
MI0004728
Description
Physcomitrella patens ppt-MIR1223a precursor miRNA
Gene family
MIPF0000383; MIR1223


Sequence

agacuagagggucagcaagggugugugacucuauaauccaagcugugcuaguagaucgcuuaagaucgaagugcacaccaagcauucgaUUGUAGAGUCAUACACCUCCAcugacacuucuagucu
(((((((((((((((...((((((((((((((((((((.(((((((((.....((((......)))).....))))....))).)).))))))))))))))))))))...))))).))))))))))

Structure
          -     caa                    c  -   ----    uagua    gc 
agacuagagg gucag   gggugugugacucuauaauc aa gcu    gugc     gauc  u
|||||||||| |||||   |||||||||||||||||||| || |||    ||||     ||||   
ucugaucuuc caguc   UCCACAUACUGAGAUGUUag uu cga    cacg     cuag  u
          a     ACC                    c  a   acca    ugaag    aa 


Annotation confidence Not enough data
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Genome context
Chr06: 2753805-2753930 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1223a

Accession MIMAT0003918
Description Physcomitrella patens ppt-miR1223a mature miRNA
Sequence 90 - UUGUAGAGUCAUACACCUCCA - 110
Evidence experimental
Northern [1], 454 [2]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769

  2. PubMed ID: 16824179
    Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
    "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
    "Plant J (2006) 47:25-37