Stem-loop ppt-MIR1222a

Accession

MI0004727

Description

Physcomitrella patens ppt-MIR1222a precursor miRNA

Gene family

MIPF0000410; MIR1222

Sequence

cacgacauagcugguuguugugggcauucuugugcuaguaaacuccuucaugcagaagugcgcuucuagcaccugcUUGAAGGAGUUCAUUGGUAUAuaaaugcccacaacaugaugaccgauuaacgug
((((...(((.(((((((((((((((((..(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))..))))))))))))).....)))).))).))))

Structure

    aca   c    -----             cu         a          u    aa    gc 
cacg   uag uggu     uguugugggcauu  ugugcuagu aacuccuuca gcag  gugc  u
||||   ||| ||||     |||||||||||||  ||||||||| |||||||||| ||||  ||||  u
gugc   auu gcca     acaacacccguaa  AUAUGGUUA UUGAGGAAGU cguc  cacg  c
    --a   a    guagu             au         C          U    --    au 

Annotation confidence Not enough data

Genome context

Chr04: 9856968-9857097 [-]

Mature ppt-miR1222a

• Accession: MIMAT0003917
• Description: Physcomitrella patens ppt-miR1222a mature miRNA
• Sequence: 77 - UUGAAGGAGUUCAUUGGUAUA - 97
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37