miRBase entry: ppt-MIR535d

Stem-loop ppt-MIR535d


Accession
MI0004725
Description
Physcomitrella patens ppt-MIR535d precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
2 open access papers mention ppt-MIR535d
(3 sentences)

Sequence

ggUGACAACGAGAGAGAGCACGCcggaaugcguucaugcagcgagugccuggagguguucgagcgugcccucucccgucgucacc
((((((.(((.(((((.((((((..((((((.((((.(((.....))).)))).))))))..)))))).))))).))).))))))

Structure
      A   A     A      cg      g    u   g 
ggUGAC ACG GAGAG GCACGC  gaaugc uuca gca c
|||||| ||| ||||| ||||||  |||||| |||| ||| g
ccacug ugc cucuc cgugcg  cuugug aggu cgu a
      c   c     c      ag      g    c   g 


Annotation confidence Not enough data
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Chr20: 10153735-10153819 [+]

Database links

Mature ppt-miR535d

Accession MIMAT0003915
Description Physcomitrella patens ppt-miR535d mature miRNA
Sequence 3 - UGACAACGAGAGAGAGCACGC - 23
Evidence experimental
cloned [2], 454 [3]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769

  3. PubMed ID: 16824179
    Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
    "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
    "Plant J (2006) 47:25-37